PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen01g050140.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family bHLH
Protein Properties Length: 841aa    MW: 92786.4 Da    PI: 10.3051
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen01g050140.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.94.9e-1097145355
                       HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       + h+  Er RR+++++ fe+L  l+P++      K +K+ i+ +Av+ I++Lq
  Sopen01g050140.1  97 EVHKWTERERRKKMRTLFETLHALVPNL----PAKADKSKIVYEAVNRIRKLQ 145
                       568889*********************6....39******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.101.7E-1191160IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.75E-992146No hitNo description
SuperFamilySSF474592.09E-1293164IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088813.27594144IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.6E-797145IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.2E-4102150IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:3.30.70.2608.1E-5217265No hitNo description
SuperFamilySSF550211.04E-5218269No hitNo description
PROSITE profilePS516719.553220293IPR002912ACT domain
CDDcd048736.59E-6221281No hitNo description
PfamPF142231.3E-32367505No hitNo description
SuperFamilySSF577566.28E-7527562IPR001878Zinc finger, CCHC-type
Gene3DG3DSA:4.10.60.102.4E-5541561IPR001878Zinc finger, CCHC-type
PfamPF000981.7E-4545561IPR001878Zinc finger, CCHC-type
SMARTSM003430.0017545561IPR001878Zinc finger, CCHC-type
PROSITE profilePS501588.927546561IPR001878Zinc finger, CCHC-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0003676Molecular Functionnucleic acid binding
GO:0008270Molecular Functionzinc ion binding
GO:0016597Molecular Functionamino acid binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 841 aa     Download sequence    Send to blast
MNEGGENNHD HLCDDIWSHL DWNDHQVESG ETEGNKLLDP TGSDTCQPLT VTNEVVEGSV  60
NVAKRRSSAN RKKNGKEIAE PNSGVDGAEV RRASKHEVHK WTERERRKKM RTLFETLHAL  120
VPNLPAKADK SKIVYEAVNR IRKLQNTFNK LKSQKLERLE ENNIMLMGSQ KVGNSWEKHA  180
GDQGSICNSK AITPANHGPT GFMTWSSPNV ILNVSGEDAH ISVCCPKKPG LFTTICYVLE  240
KHKIDIVSAQ ISSDQFRSMF MIQAHAKGRS SRRYRVGNLK QQPARRTAQG ANSRRPCAVR  300
RAVPLAAASR SLRSSRERPD QDGKFRIEKF DGTDFSWWKM QIEDLLVQKD LDVVLGDKQG  360
KLSDAEWAVL DRKAMSVIRL SLTKNVAFNI LKEKTAKGIL EALSNMYEKP SAANKIFLIR  420
ELVNTKMKEG SSVTEHINSL NSILARLLSV GIKFDDEVQA LLLLSSLPDS WSGTVTAVAS  480
SVGPNGFTFE KIRDLVLGED VRRRSSGESS GDMLNVVRGR GNNRGSGSRN RRRSQSKARD  540
GSGVTCWNCK EVGHFRNQCQ KDKQVNIAED SVNEDLFICC AESNVDSWVM DSGASFHATH  600
SSEALQNLVI GDFGKVRLAD DRALDVTGMG DMVLKTPVGF WTLKDVRVVP SLTKSLISVR  660
QLDEQGHHVK FGNGQWKVVR GNLVMARGTK RGSLYIVGLP SEGVTVPVQK KNKVRFTESR  720
GQKKVVFARK KPRATGQIQD ERARKGSGRP VRGVCGSGST GRASAKAPRR QWVKRTSIPA  780
VDTSPENILL SMESVCSQGV LGSGSSCLKW EPVGTEDESR AVSAVTDVLK LRGASTGLSV  840
D
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754400.0HG975440.1 Solanum pennellii chromosome ch01, complete genome.
GenBankHG9754410.0HG975441.1 Solanum pennellii chromosome ch02, complete genome.
GenBankHG9754420.0HG975442.1 Solanum pennellii chromosome ch03, complete genome.
GenBankHG9754440.0HG975444.1 Solanum pennellii chromosome ch05, complete genome.
GenBankHG9754450.0HG975445.1 Solanum pennellii chromosome ch06, complete genome.
GenBankHG9754460.0HG975446.1 Solanum pennellii chromosome ch07, complete genome.
GenBankHG9754480.0HG975448.1 Solanum pennellii chromosome ch09, complete genome.
GenBankHG9754490.0HG975449.1 Solanum pennellii chromosome ch10, complete genome.
GenBankHG9754500.0HG975450.1 Solanum pennellii chromosome ch11, complete genome.
GenBankHG9754510.0HG975451.1 Solanum pennellii chromosome ch12, complete genome.
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13242369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49770.12e-37bHLH family protein